med: rebuild for hdf5

srcpkgs/med/patches/hdf5-1.14.patch

@@ -0,0 +1,99 @@
+https://salsa.debian.org/science-team/med-fichier/-/blob/master/debian/patches/hdf5-1.14.patch
+
+Index: med-fichier/config/med_check_hdf5.m4
+===================================================================
+--- med-fichier.orig/config/med_check_hdf5.m4
++++ med-fichier/config/med_check_hdf5.m4
+@@ -134,12 +134,6 @@ AC_REQUIRE([AC_PROG_GREP])
+          H5_VER_MINOR=`  grep '#define *H5_VERS_MINOR' $HDF5_ABS_PATH | sed  's/^.*H5_VERS_MINOR[ \t]*\([0-9]*\)[ \t]*.*$/\1/g' `
+          H5_VER_RELEASE=`grep '#define *H5_VERS_RELEASE' $HDF5_ABS_PATH | sed  's/^.*H5_VERS_RELEASE[ \t]*\([0-9]*\)[ \t]*.*$/\1/g' `
+          HDF5_VERSION=`  expr 10000 \* ${H5_VER_MAJOR} + 100 \* ${H5_VER_MINOR} + ${H5_VER_RELEASE} `
+-         test "0${HDF5_VERSION}" -gt "11100" || test "0${HDF5_VERSION}" -lt "11002" && AC_MSG_ERROR([
+-This HDF5 version ${H5_VER_MAJOR}.${H5_VER_MINOR}.${H5_VER_RELEASE} must not be used with med-fichier${MED_NUM_MAJEUR}.${MED_NUM_MINEUR}.${MED_NUM_RELEASE}.
+-The HDF5 library version used by med-fichier${MED_NUM_MAJEUR}.y.z MUST NOT be > 1.10 and have to be at least HDF${HDF_VERSION_REF}.
+-DO NOT TRY TO COMPILE med-fichier${MED_NUM_MAJEUR}.${MED_NUM_MINEUR}.${MED_NUM_RELEASE} version with an HDF5 library which would generate an hdf5 file not compliant with HDF5-${HDF_VERSION_MAJOR_REF}.${HDF_VERSION_MINOR_REF}.z library.
+-This would BREAK med-fichier compatibility between files with the same revision number !
+-      ])
+      else
+ ## In case user explicitly ask to not use hdf5 !
+       AC_MSG_WARN([Can't compile MED without hdf5])
+Index: med-fichier/src/ci/MEDfileCompatibility.c
+===================================================================
+--- med-fichier.orig/src/ci/MEDfileCompatibility.c
++++ med-fichier/src/ci/MEDfileCompatibility.c
+@@ -15,7 +15,6 @@
+  *  along with MED.  If not, see <http://www.gnu.org/licenses/>.
+  */
+ 
+-
+ #include <med.h>
+ #include <med_config.h>
+ #include <med_outils.h>
+@@ -71,7 +70,7 @@ MEDfileCompatibility(const char* const f
+   _hversionMMR=10000*_hmajeur+100*_hmineur+_hrelease;
+   /* ISCRUTE(_hversionMMR); */
+   /* ISCRUTE(HDF_VERSION_NUM_REF); */
+-  if ( (_hversionMMR >= HDF_VERSION_NUM_REF) && (_hmineur == HDF_VERSION_MINOR_REF) ) *hdfok = MED_TRUE;
++  if ( (_hversionMMR >= HDF_VERSION_NUM_REF) && (_hmineur >= HDF_VERSION_MINOR_REF) ) *hdfok = MED_TRUE;
+ 
+   /* TODO : Vérifier si la version mineure HDF du fichier est supérieure
+      à la version mineure de la bibliothèque HDF utilisée :
+@@ -114,8 +113,8 @@ MEDfileCompatibility(const char* const f
+ #error "Don't forget to update the test version here when you change the major version of the library !"
+ #endif
+ #if H5_VERS_MINOR > 10
+-#error "Don't forget to check the compatibility version of the library, depending on the internal hdf model choice !"
+-#error "Cf. _MEDfileCreate ..."
++#warning "Don't forget to check the compatibility version of the library, depending on the internal hdf model choice !"
++#warning "Cf. _MEDfileCreate ..."
+ #endif
+ 
+  SORTIE:
+Index: med-fichier/src/hdfi/_MEDfileCreate.c
+===================================================================
+--- med-fichier.orig/src/hdfi/_MEDfileCreate.c
++++ med-fichier/src/hdfi/_MEDfileCreate.c
+@@ -132,7 +132,7 @@ med_idt _MEDfileCreate(const char * cons
+     {
+     case 0: _release = MED_40_LATEST_RELEASE; break;
+ #if (MED_NUM_MINEUR == 0) && (MED_NUM_RELEASE > 1)
+-#error "Don't forget to change the value of MED_40_LATEST_RELEASE when you change the release of version 4.0 of the library !"
++#warning "Don't forget to change the value of MED_40_LATEST_RELEASE when you change the release of version 4.0 of the library !"
+ #endif
+     /* case 1: _release = 0; break; */
+     /* case 2: _release = 1; break; */
+@@ -160,7 +160,7 @@ med_idt _MEDfileCreate(const char * cons
+    * Un test autoconf permet de fixer un intervalle de version HDF à MED.
+    */
+ #if H5_VERS_MINOR > 10
+-#error "Don't forget to change the compatibility version of the library !"
++#warning "Don't forget to change the compatibility version of the library !"
+ #endif
+    
+   if ( H5Pset_libver_bounds( _fapl, H5F_LIBVER_18, H5F_LIBVER_18 ) ) {
+Index: med-fichier/src/hdfi/_MEDfileOpen.c
+===================================================================
+--- med-fichier.orig/src/hdfi/_MEDfileOpen.c
++++ med-fichier/src/hdfi/_MEDfileOpen.c
+@@ -73,7 +73,7 @@ med_idt _MEDfileOpen(const char * const
+    •   The creation order tracking property, H5P_CRT_ORDER_TRACKED, has been set in the group creation property list (see H5Pset_link_creation_order). 
+   */
+ #if H5_VERS_MINOR > 10
+-#error "Don't forget to change the compatibility version of the library !"
++#warning "Don't forget to change the compatibility version of the library !"
+ #endif
+ /* L'avantage de bloquer le modèle interne HDF5 
+    est que l'on peut modifier des fichiers med de différentes versions majeures de fichiers.
+Index: med-fichier/src/hdfi/_MEDmemFileOpen.c
+===================================================================
+--- med-fichier.orig/src/hdfi/_MEDmemFileOpen.c
++++ med-fichier/src/hdfi/_MEDmemFileOpen.c
+@@ -435,7 +435,7 @@ med_idt _MEDmemFileOpen(const char * con
+   }
+ 
+ #if H5_VERS_MINOR > 10
+-#error "Don't forget to change the compatibility version of the library !"
++#warning "Don't forget to change the compatibility version of the library !"
+ #endif
+   if ( H5Pset_libver_bounds( _fapl, H5F_LIBVER_18, H5F_LIBVER_18) ) {
+     MED_ERR_(_fid,MED_ERR_INIT,MED_ERR_PROPERTY,MED_ERR_FILEVERSION_MSG);

srcpkgs/med/patches/hdf5-version.patch

@@ -0,0 +1,17 @@
+Don't complain on hdf5, it works with hdf5 1.14 using `-DH5_USE_110_API=1`
+
+--- a/config/cmake_files/medMacros.cmake
++++ b/config/cmake_files/medMacros.cmake
+@@ -447,9 +447,9 @@
+     ##
+     ## Requires 1.10.x version
+     ##
+-    IF (NOT HDF_VERSION_MAJOR_REF EQUAL 1 OR NOT HDF_VERSION_MINOR_REF EQUAL 10 OR NOT HDF_VERSION_RELEASE_REF GREATER 1)
+-        MESSAGE(FATAL_ERROR "HDF5 version is ${HDF_VERSION_REF}. Only versions >= 1.10.2 are supported.")
+-    ENDIF()
++    # IF (NOT HDF_VERSION_MAJOR_REF EQUAL 1 OR NOT HDF_VERSION_MINOR_REF EQUAL 10 OR NOT HDF_VERSION_RELEASE_REF GREATER 1)
++    #     MESSAGE(FATAL_ERROR "HDF5 version is ${HDF_VERSION_REF}. Only versions >= 1.10.2 are supported.")
++    # ENDIF()
+     ##
+     ##
+ 

srcpkgs/med/template

@@ -14,7 +14,8 @@ homepage="https://www.salome-platform.org"
 distfiles="https://github.com/chennes/med/archive/v${version}.tar.gz"
 checksum=ee8b3b6d46bfee25c1d289308b16c7f248d1339161fd5448339382125e6119ad
 
-nocross="hdf5 is nocross"
+# uses hdf5 old api
+CFLAGS+=" -DH5_USE_110_API=1"
 
 post_extract() {
 	# The py-compile helper uses the imp module, removed in Python 3.12;